Categories for Epidemiology

Xiaoyan Li, Sophie Libkind, Nathaniel D. Osgood, Eric Redekopp and I have been creating software for modeling the spread of disease… with the help of category theory!

Lots of epidemiologists use “stock-flow diagrams” to describe ordinary differential equation (ODE) models of disease dynamics. We’ve created two tools to help them.

The first, called StockFlow.jl, is based on category theory and written in AlgebraicJulia, a framework for programming with categories that many people either at or as...