After 1857 Baghawat in India, Syed Ahmed Khan felt that Britishers think that Muslims were the majors cause of that Baghawat. So he disagrees with that analysis and thought that reasons were different and if he is able to get point across with Britishers, Government might better treat Muslims.
One of the major reason was that British Government was not "inclusive" for Indians. Other reasons is that Britishers failed to understand the culture and religion of people.